Extract statistically significant biomarkers

get_significant_biomarker(object, cutoff = 0.5)

Arguments

object

data_adapt object

cutoff

cut-off value for composition percentage

Value

(integer vector) of significant gene index

Examples

set.seed(1234) data(simpleArray) simulated_array <- simulated_array simulated_treatment <- simulated_treatment adaptest_out <- adaptest(Y = simulated_array, A = simulated_treatment, W = NULL, n_top = 5, n_fold = 3, learning_library = 'SL.glm', parameter_wrapper = adaptest::rank_DE, absolute = FALSE, negative = FALSE) get_significant_biomarker(adaptest_out)
#> [1] 3 5