All functions
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adapTMLE-class
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Constructor for class adaptmle |
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adaptest()
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Data-adaptive Statistics for High-Dimensional Multiple Testing |
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bioadaptest()
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Data Adaptive Multiple Testing for Computational Biology |
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cv_param_est()
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Compute data-adaptive parameter estimate for a single cross-validation fold |
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data_adapt()
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S3-Style Constructor for Data Adaptive Parameter Class |
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get_composition()
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Decomposition tables of the data-adaptive parameter after data-mining |
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get_significant_biomarker()
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Extract statistically significant biomarkers |
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plot(<data_adapt>)
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Plot method for data_adapt objects |
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print(<data_adapt>)
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Print method for data_adapt objects |
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rank_DE()
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Compute ranking of biomarkers by sorting effect sizes |
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rank_ttest()
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Compute ranking of biomarkers by sorting t-test p-values |
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simulated_array
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Simulated differential expression data with one exposure |
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simulated_treatment
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Simulated differential expression data with one exposure |
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summary(<data_adapt>)
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Summary tables for data_adapt objects |