All functions

adapTMLE-class

Constructor for class adaptmle

adaptest()

Data-adaptive Statistics for High-Dimensional Multiple Testing

bioadaptest()

Data Adaptive Multiple Testing for Computational Biology

cv_param_est()

Compute data-adaptive parameter estimate for a single cross-validation fold

data_adapt()

S3-Style Constructor for Data Adaptive Parameter Class

get_composition()

Decomposition tables of the data-adaptive parameter after data-mining

get_significant_biomarker()

Extract statistically significant biomarkers

plot(<data_adapt>)

Plot method for data_adapt objects

print(<data_adapt>)

Print method for data_adapt objects

rank_DE()

Compute ranking of biomarkers by sorting effect sizes

rank_ttest()

Compute ranking of biomarkers by sorting t-test p-values

simulated_array

Simulated differential expression data with one exposure

simulated_treatment

Simulated differential expression data with one exposure

summary(<data_adapt>)

Summary tables for data_adapt objects